Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1909307_1910017_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1909307 - 1910017

Intron Length:

711

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGGCAT

U12 Branch Point Sequence:

TCTCCCCTTACA

Flanking Amino Acid:

RGSFKNPVVTKCRHYFCESC

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.9

35.3

Major BPS

46.9

-0.1

1.6

57.1

49.4

Major PPT

82.8

0.74

0.7

76.2

Minor 5ss

36.1

-1.6

3.3

49.5

41.2

Minor BPS

53.9

0.12

70.11

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012510

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013074

1908620 - 1915884

7265