Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1910112_1910949_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1910112 - 1910949

Intron Length:

838

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTACGGCAC

5'SS Class:

major

3'SS Sequence:

TTCTCTTGTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTTAC

U12 Branch Point Sequence:

GTCTGGTTACCT

Flanking Amino Acid:

ELDEGRYGGNDEENYEVSSD

Intron Amino Acid Position:

497

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

56.8

42.2

Major BPS

56.3

0.16

1.3

49.1

Major PPT

83.6

0.76

0.8

80.1

31.9

Minor 5ss

30.1

-2.3

3.4

37.9

41.6

Minor BPS

44.8

-0.3

2.6

67.9

48.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012510

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013074

1908620 - 1915884

7265