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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1911040_1911519_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1911040 - 1911519
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAA
U12 Branch Point Sequence:
AAGATGTGAATC
Flanking Amino Acid:
YKETGFCGFGDSCKFLHDRS
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
63.3
0.33
1.2
55.1
42.1
Major PPT
76.4
0.59
0.9
73.7
36.9
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
42.1
-0.6
2
47.05
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012510
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013074
1908620 - 1915884
7265