Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1911627_1911830_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1911627 - 1911830

Intron Length:

204

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTCGG

5'SS Class:

strong_major

3'SS Sequence:

CCCACCCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCCCAC

U12 Branch Point Sequence:

CTTCTCCCACCC

Flanking Amino Acid:

SMGNASSGMVRKGPIRAPEH

Intron Amino Acid Position:

431

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

63.6

48.1

Major BPS

1.2

61.8

35.9

Major PPT

73.3

0.52

0.8

68.7

31.6

Minor 5ss

32.2

-2

3.1

40.9

45.4

Minor BPS

42.8

-0.5

56.28

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012510

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013074

1908620 - 1915884

7265