About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1958458_1960298_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1958458 - 1960298
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAGCAC
U12 Branch Point Sequence:
ACAGCCAAAAAG
Flanking Amino Acid:
AVQERNIPTKSPSAPINWRR
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
47.8
-0.1
1.4
57.5
39.1
Major PPT
78.8
0.65
0.8
76.8
37.4
Minor 5ss
36.8
-1.5
3.4
53.8
43.7
Minor BPS
40.3
-0.8
2
40.68
43.1

Associated Gene:

Gene:
MAP3K3
Ensembl Gene ID:
ENSAPLG00000013287
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013844
1950503 - 1978143
27641