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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1961729_1963449_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1961729 - 1963449
Intron Length:
1721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGGCT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
CTTTCTTTAATA
Flanking Amino Acid:
SCQSLDRSADSPSFRKSRMS
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
65.5
38.3
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
79.7
0.67
0.8
77.2
30.1
Minor 5ss
37.3
-1.4
3.7
56.2
48.2
Minor BPS
81
0.97
1
82.68
32.7

Associated Gene:

Gene:
MAP3K3
Ensembl Gene ID:
ENSAPLG00000013287
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013844
1950503 - 1978143
27641