Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_1971967_1973256_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1971967 - 1973256

Intron Length:

1290

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACAGAGC

5'SS Class:

major

3'SS Sequence:

CTGTATTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTCTAATG

Flanking Amino Acid:

PLDLHYMNNELSIPLKNQDD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

61.3

43.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.1

0.72

0.9

76.5

37.2

Minor 5ss

30.9

-2.2

3.4

43.1

44.1

Minor BPS

62.3

0.25

1.7

71.16

36.4

Associated Gene:

Gene:

MAP3K3

Ensembl Gene ID:

ENSAPLG00000013287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013844

1950503 - 1978143

27641