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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2001099_2001676_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2001099 - 2001676
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTCTACTTATTT
Flanking Amino Acid:
PHSSCHICTAADDHQALIWD
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
87.7
0.85
0.8
84.5
30.4
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
62.8
0.48
1.8
80.67
41.5

Associated Gene:

Gene:
DCAF7
Ensembl Gene ID:
ENSAPLG00000013326
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042520
1999931 - 2010794
10864
ENSAPLT00000013905
2000926 - 2012237
11312