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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2002592_2003248_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2002592 - 2003248
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGGCT
5'SS Class:
major
3'SS Sequence:
TGGTGCCGAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTAAAA
U12 Branch Point Sequence:
TGGTGCCGAGCA
Flanking Amino Acid:
KTQLIAHDKEVYDIAFSRAG
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.4
36.2
Major BPS
51.8
0.04
1
59.2
33.2
Major PPT
57.4
0.17
1.1
51.8
42.7
Minor 5ss
26.5
-2.7
3.5
39
46.3
Minor BPS
40.7
-0.7
2.2
53.99
44

Associated Gene:

Gene:
DCAF7
Ensembl Gene ID:
ENSAPLG00000013326
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042520
1999931 - 2010794
10864
ENSAPLT00000013905
2000926 - 2012237
11312