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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2015464_2015869_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2015464 - 2015869
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTTGTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TCCTGGTGACCA
Flanking Amino Acid:
NLEITFNLRDADSVPRTPLS
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.3
32.2
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
75.5
0.57
0.8
73.9
31.3
Minor 5ss
30.9
-2.2
3.2
40.5
38.7
Minor BPS
38.7
-0.8
2.5
51.11
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014145
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014745
2012240 - 2040187
27948