Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2051267_2052280_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2051267 - 2052280

Intron Length:

1014

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

CTCCATTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

ATTTCTCCATTT

Flanking Amino Acid:

YQSKEAGNLLGRSKPSWLLR

Intron Amino Acid Position:

1154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

69.7

41.3

Major BPS

0.5

1.1

71.2

35.2

Major PPT

80.7

0.69

0.8

72.1

37.6

Minor 5ss

32.6

-2

3.1

33.4

41.6

Minor BPS

-0.1

71.24

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014288

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021348

2050621 - 2064347

13727

ENSAPLT00000014983

2050621 - 2067124

16504