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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2052927_2053131_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2052927 - 2053131
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCTCG
5'SS Class:
major
3'SS Sequence:
CTCTCTGGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
CCTCCCCAAACT
Flanking Amino Acid:
DEYNQQWWNLRLKYQGLCPP
Intron Amino Acid Position:
1080

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
61.1
40.2
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
67.8
0.4
1
60.3
40.3
Minor 5ss
44.8
-0.6
2.7
56.2
48.2
Minor BPS
49.2
0.02
2.1
69.93
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014288
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027033
2050936 - 2064347
13412
ENSAPLT00000021348
2050621 - 2064347
13727
ENSAPLT00000014983
2050621 - 2067124
16504