Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2053722_2054211_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2053722 - 2054211

Intron Length:

490

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCCTGCA

5'SS Class:

major

3'SS Sequence:

TGTCCTCATCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

ATGTCCTCATCC

Flanking Amino Acid:

AWDFYNRKDFRIKQCTVVNM

Intron Amino Acid Position:

957

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.42

1.2

62.2

38.5

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

0.56

0.9

66.4

39.8

Minor 5ss

-2.1

3.3

41.7

44.9

Minor BPS

57.7

0.22

1.8

69.22

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014288

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027033

2050936 - 2064347

13412

ENSAPLT00000021348

2050621 - 2064347

13727

ENSAPLT00000014983

2050621 - 2067124

16504