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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2054776_2054995_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2054776 - 2054995
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
TCTCCCTCCATC
Flanking Amino Acid:
LKGPIPAHLLGNMWAQSWSN
Intron Amino Acid Position:
867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
76.7
0.6
0.8
68.6
37.2
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
49.4
-0
2
63.85
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014288
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027033
2050936 - 2064347
13412
ENSAPLT00000021348
2050621 - 2064347
13727
ENSAPLT00000014983
2050621 - 2067124
16504