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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2055559_2055761_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2055559 - 2055761
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAT
U12 Branch Point Sequence:
TCTGGCTTCACT
Flanking Amino Acid:
ENKTCHPLDPDLTDILAKSQ
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
63.3
0.33
1.2
65.6
39.7
Major PPT
76.2
0.59
0.8
73.7
31.4
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
51
0.11
2.3
75
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014288
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027033
2050936 - 2064347
13412
ENSAPLT00000021348
2050621 - 2064347
13727
ENSAPLT00000014983
2050621 - 2067124
16504