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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2057248_2057739_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2057248 - 2057739
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACA
5'SS Class:
major
3'SS Sequence:
CACTCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
CCGACCTAATGC
Flanking Amino Acid:
YKSTEAGAKLREVLEAGSSK
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
38.2
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
75.9
0.58
0.8
69.2
30.9
Minor 5ss
25.7
-2.8
3.1
31.1
42.7
Minor BPS
39.7
-0.8
2.1
41.86
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014288
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027033
2050936 - 2064347
13412
ENSAPLT00000021348
2050621 - 2064347
13727
ENSAPLT00000014983
2050621 - 2067124
16504