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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2057863_2058083_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2057863 - 2058083
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGAG
5'SS Class:
major
3'SS Sequence:
GCTTCCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCACCTTCACG
Flanking Amino Acid:
YHIPGNTPYIRYFVSFILQF
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
57.3
42
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
70
0.45
1
65.6
36
Minor 5ss
26.5
-2.7
3.7
36.3
48.1
Minor BPS
54.6
-0
2
59.56
48

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014288
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027033
2050936 - 2064347
13412
ENSAPLT00000021348
2050621 - 2064347
13727
ENSAPLT00000014983
2050621 - 2067124
16504