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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2061912_2062146_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2061912 - 2062146
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGAGCG
5'SS Class:
major
3'SS Sequence:
TGCCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAC
U12 Branch Point Sequence:
GGGGTCATCACT
Flanking Amino Acid:
QLSNEAYRMDGFEDTGSYWR
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.1
51
40.3
Major BPS
65.7
0.39
1.1
67.9
37.7
Major PPT
76.3
0.59
0.8
69.7
31.1
Minor 5ss
24.7
-2.9
3.3
30.8
42.6
Minor BPS
43.4
-0.4
2
57.68
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014288
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027033
2050936 - 2064347
13412
ENSAPLT00000021348
2050621 - 2064347
13727
ENSAPLT00000014983
2050621 - 2067124
16504