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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2062665_2063852_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2062665 - 2063852
Intron Length:
1188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAG
5'SS Class:
major
3'SS Sequence:
TCCCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
CCAGCCCCAATG
Flanking Amino Acid:
SNLPLDKRQQYNTILSDMDK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
74.6
0.55
0.7
69
24.8
Minor 5ss
37.3
-1.4
3.1
47.3
48.3
Minor BPS
41.8
-0.7
1.9
40.69
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014288
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027033
2050936 - 2064347
13412
ENSAPLT00000021348
2050621 - 2064347
13727
ENSAPLT00000014983
2050621 - 2067124
16504