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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2096285_2097252_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2096285 - 2097252
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATCTC
5'SS Class:
major
3'SS Sequence:
CTGTACACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AGTTTTTTACCC
Flanking Amino Acid:
GCQTLPSRPRGPATWAMATS
Intron Amino Acid Position:
1217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
71.2
38.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70.5
0.46
1
62.5
38.3
Minor 5ss
44.2
-0.6
2.9
61.5
43.4
Minor BPS
60.7
0.31
1.6
68.66
37

Associated Gene:

Gene:
TANC2
Ensembl Gene ID:
ENSAPLG00000015374
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023682
2087814 - 2298731
210918