Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2114324_2119015_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2114324 - 2119015

Intron Length:

4692

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAAAA

5'SS Class:

major

3'SS Sequence:

TTCTGTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTCAT

U12 Branch Point Sequence:

TTCTGTTTCACA

Flanking Amino Acid:

HHILKAHIFKGLSKKVGVSS

Intron Amino Acid Position:

829

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

1.1

76.9

33.7

Major BPS

68.2

0.45

1.1

69.4

37.7

Major PPT

83.9

0.76

0.8

79.1

32.9

Minor 5ss

38.3

-1.3

2.9

48.8

46.9

Minor BPS

52.5

0.07

2.2

70.26

42.8

Associated Gene:

Gene:

TANC2

Ensembl Gene ID:

ENSAPLG00000015374

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023682

2087814 - 2298731

210918

ENSAPLT00000021631

2111353 - 2123677

12325

ENSAPLT00000016062

2087814 - 2298731

210918