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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2119122_2123651_R

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
2119122 - 2123651
Intron Length:
4530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTTTCTTTG
5'SS Class:
weak_minor
3'SS Sequence:
CTCTTTTTAGGAG|T
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CTCTTTTTAGGA
Flanking Amino Acid:
LTLFFACLLGHTLLAFWF
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
46.7
-0.2
1.3
47.8
43
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
61
0.25
1.7
73
36
Minor 5ss
66.5
0.56
1.8
77.7
36.9
Minor BPS
48
-0.1
1.8
57.59
43

Associated Gene:

Gene:
TANC2
Ensembl Gene ID:
ENSAPLG00000015374
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021631
2111353 - 2123677
12325