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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2210449_2235891_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2210449 - 2235891
Intron Length:
25443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CTTTCTTTCTCC
Flanking Amino Acid:
VRLQPVKKLTAPLRKAKFVE
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
77.7
0.62
0.7
77
25.1
Minor 5ss
35
-1.7
3.2
47
42.5
Minor BPS
43.7
-0.4
3.6
69.42
42.8

Associated Gene:

Gene:
TANC2
Ensembl Gene ID:
ENSAPLG00000015374
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023682
2087814 - 2298731
210918