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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2383755_2392186_F

Intron Information:

Intron Rank:
140994
Intron Class:
major
Intron Phase:
Intron Coordinates:
2383755 - 2392186
Intron Length:
8432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAG
U12 Branch Point Sequence:
AGTTCAGTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
63
0.32
1.6
71.9
41
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
44.6
-0.4
2.5
62.76
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025929
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037431
2383522 - 2392910
9389