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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2392369_2399180_F

Intron Information:

Intron Rank:
140988
Intron Class:
major
Intron Phase:
Intron Coordinates:
2392369 - 2399180
Intron Length:
6812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCATTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.9
0.81
0.8
83.8
31.2
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
55.3
0.25
1.8
78.34
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025929
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018305
2392292 - 2399702
7411