About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2452597_2453601_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2452597 - 2453601
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CAACCTTTAACA
Flanking Amino Acid:
IFYQCLYGRKPFGHNQSQQD
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
79
0.65
0.9
77.7
36
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
66.7
0.52
1.3
66.96
39.1

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023672
2451467 - 2506997
55531
ENSAPLT00000020227
2451467 - 2506911
55445
ENSAPLT00000038030
2451467 - 2491653
40187
ENSAPLT00000001909
2451467 - 2506911
55445
ENSAPLT00000035710
2451467 - 2506997
55531
ENSAPLT00000025693
2451467 - 2506911
55445