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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2453714_2454846_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2453714 - 2454846
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTCTCCTCATCA
Flanking Amino Acid:
ELTSQGAGTYWYLPPECFVV
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
78.8
0.65
0.8
78.4
28.8
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
62.7
0.39
1.8
75.6
41.9

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001909
2451467 - 2506911
55445
ENSAPLT00000035710
2451467 - 2506997
55531
ENSAPLT00000025693
2451467 - 2506911
55445
ENSAPLT00000023672
2451467 - 2506997
55531
ENSAPLT00000020227
2451467 - 2506911
55445
ENSAPLT00000038030
2451467 - 2491653
40187