Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2454986_2456491_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2454986 - 2456491

Intron Length:

1506

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCTAT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCCGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

TATATCCTAAGA

Flanking Amino Acid:

PPIIHYDLKPGNILLVNGTA

Intron Amino Acid Position:

546

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

76.7

34.9

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

74.6

0.55

0.8

73.6

31.5

Minor 5ss

55.7

0.19

2.5

72.7

44.5

Minor BPS

49.5

-0

65.8

40.2

Associated Gene:

Gene:

TLK2

Ensembl Gene ID:

ENSAPLG00000001568

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023672

2451467 - 2506997

55531

ENSAPLT00000020227

2451467 - 2506911

55445

ENSAPLT00000038030

2451467 - 2491653

40187

ENSAPLT00000001909

2451467 - 2506911

55445

ENSAPLT00000035710

2451467 - 2506997

55531

ENSAPLT00000025693

2451467 - 2506911

55445