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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2467218_2468634_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2467218 - 2468634
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
CTCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TTCTGCTTCATG
Flanking Amino Acid:
TDGYAFQNLIKQQERINSQR
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
71.2
34
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
87.6
0.85
0.7
80.1
32
Minor 5ss
28.8
-2.4
3
32.3
35.8
Minor BPS
49.7
-0.1
2.2
62.41
46.2

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025693
2451467 - 2506911
55445
ENSAPLT00000023672
2451467 - 2506997
55531
ENSAPLT00000020227
2451467 - 2506911
55445
ENSAPLT00000038030
2451467 - 2491653
40187
ENSAPLT00000001909
2451467 - 2506911
55445
ENSAPLT00000035710
2451467 - 2506997
55531