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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2471796_2474721_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2471796 - 2474721
Intron Length:
2926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGCTT
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GTTCTATTAAAT
Flanking Amino Acid:
QISIQHKQSQSDLTMEKISA
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.5
42.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
93.1
0.97
0.6
88.4
21.4
Minor 5ss
42.1
-0.9
3.5
64.4
47
Minor BPS
58.1
0.33
1.7
76.95
38.6

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023672
2451467 - 2506997
55531
ENSAPLT00000020227
2451467 - 2506911
55445
ENSAPLT00000001909
2451467 - 2506911
55445
ENSAPLT00000038030
2451467 - 2491653
40187
ENSAPLT00000035710
2451467 - 2506997
55531