About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2474818_2475370_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2474818 - 2475370
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
AATACACTAACT
Flanking Amino Acid:
GGGLCFTFVSAQQGSPSSTG
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.5
42.9
Major BPS
69.1
0.48
1
70
32.1
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
34.8
-1.7
2.9
43.9
43.7
Minor BPS
52.8
0.17
2
75.27
40.2

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020227
2451467 - 2506911
55445
ENSAPLT00000038030
2451467 - 2491653
40187
ENSAPLT00000035710
2451467 - 2506997
55531
ENSAPLT00000023672
2451467 - 2506997
55531