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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2474818_2478203_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2474818 - 2478203
Intron Length:
3386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
AATACACTAACT
Flanking Amino Acid:
PQHSLSNPLPAQQGSPSSTG
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.8
38.8
Major BPS
69.1
0.48
1
70
32.1
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
40.4
-1.1
3.4
56.2
48
Minor BPS
52.8
0.17
2
75.27
40.2

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001909
2451467 - 2506911
55445