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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2479365_2480418_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2479365 - 2480418
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
AAAATATCAACT
Flanking Amino Acid:
RKAEPYETSQGKGTPRGHKI
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
70.7
41.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
39.6
-1.2
3.1
56.4
47.8
Minor BPS
47.2
-0.1
1.8
63.16
40

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025693
2451467 - 2506911
55445
ENSAPLT00000023672
2451467 - 2506997
55531
ENSAPLT00000020227
2451467 - 2506911
55445
ENSAPLT00000038030
2451467 - 2491653
40187
ENSAPLT00000001909
2451467 - 2506911
55445
ENSAPLT00000035710
2451467 - 2506997
55531