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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2480489_2482979_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2480489 - 2482979
Intron Length:
2491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTGTTTAACA
Flanking Amino Acid:
VGSLSDKELETPEKKQNDQR
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78
0.63
1
73.6
40.4
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
71.2
0.66
1.7
80.29
35.7

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023672
2451467 - 2506997
55531
ENSAPLT00000001909
2451467 - 2506911
55445
ENSAPLT00000038030
2451467 - 2491653
40187
ENSAPLT00000035710
2451467 - 2506997
55531
ENSAPLT00000025693
2451467 - 2506911
55445