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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2483052_2489696_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2483052 - 2489696
Intron Length:
6645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTCAC
5'SS Class:
major
3'SS Sequence:
TGTTTTTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCATTTCTAACT
Flanking Amino Acid:
LRPSCSALALGPLNSESSNQ
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
65
41.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.3
0.59
0.9
71.3
39.5
Minor 5ss
33.3
-1.9
3.2
40.4
40.2
Minor BPS
61.2
0.43
1.7
76.75
40

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025693
2451467 - 2506911
55445
ENSAPLT00000023672
2451467 - 2506997
55531
ENSAPLT00000001909
2451467 - 2506911
55445