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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2483052_2491564_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2483052 - 2491564
Intron Length:
8513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCATTTCTAACT
Flanking Amino Acid:
ARFTGVGVAKGPLNSESSNQ
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.5
32.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.3
0.59
0.9
71.3
39.5
Minor 5ss
34.5
-1.8
3.4
46.2
49.1
Minor BPS
61.2
0.43
1.7
76.75
40

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035710
2451467 - 2506997
55531