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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2487286_2489696_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2487286 - 2489696
Intron Length:
2411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTCAC
5'SS Class:
major
3'SS Sequence:
TGATTTGCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AATCTCTTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
65
41.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
75.6
0.58
1
69.1
41.7
Minor 5ss
33.3
-1.9
3.2
40.4
40.2
Minor BPS
65.5
0.57
1.2
75.23
35

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038030
2451467 - 2491653
40187