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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2489763_2491564_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2489763 - 2491564
Intron Length:
1802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
CATTCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GCAATATTAATC
Flanking Amino Acid:
ARFTGVGVAKVGASNSLPTP
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.5
32.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75
0.56
0.8
65.8
35.6
Minor 5ss
34.5
-1.8
3.4
46.2
49.1
Minor BPS
48.8
-0.1
1.6
53.56
37.9

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023672
2451467 - 2506997
55531
ENSAPLT00000001909
2451467 - 2506911
55445
ENSAPLT00000038030
2451467 - 2491653
40187
ENSAPLT00000025693
2451467 - 2506911
55445