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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2491654_2506901_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2491654 - 2506901
Intron Length:
15248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TGTTCTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
CATTGCATAATC
Flanking Amino Acid:
MPPAAEMMEELHS
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
79
0.65
0.8
73
32
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
50.2
-0
2
64.24
41.6

Associated Gene:

Gene:
TLK2
Ensembl Gene ID:
ENSAPLG00000001568
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025693
2451467 - 2506911
55445
ENSAPLT00000023672
2451467 - 2506997
55531
ENSAPLT00000020227
2451467 - 2506911
55445
ENSAPLT00000001909
2451467 - 2506911
55445
ENSAPLT00000035710
2451467 - 2506997
55531