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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2512541_2513027_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2512541 - 2513027
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTTTTATTT
Flanking Amino Acid:
NTVFPILQTNNDPGLFVYCC
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.6
0.8
0.8
78.2
39.7
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
62.9
0.48
1.5
80.46
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005374
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032015
2508335 - 2521027
12693
ENSAPLT00000005589
2507088 - 2522643
15556