Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2521627_2522250_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

2521627 - 2522250

Intron Length:

624

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTGAGCGTG

5'SS Class:

major

3'SS Sequence:

CCTCGGCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTCT

U12 Branch Point Sequence:

TCTCCCTTCTTC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.3

63.1

43.4

Major BPS

36.2

-0.8

4.3

65.7

43.2

Major PPT

67.2

0.39

0.9

56.8

38.7

Minor 5ss

35.9

-1.6

3.4

45.6

43.3

Minor BPS

41.4

-0.6

3.5

63.26

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005374

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005589

2507088 - 2522643

15556

Gene:

EFCAB3

Ensembl Gene ID:

ENSAPLG00000022795

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017710

2521246 - 2528515

7270