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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2522374_2522458_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2522374 - 2522458
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTTTGTTTAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.6
28.6
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
78.1
0.63
1
78.8
38.7
Minor 5ss
25.3
-2.8
3.2
31.7
42.9
Minor BPS
71.7
0.66
1.7
81.67
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005374
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005589
2507088 - 2522643
15556
Gene:
EFCAB3
Ensembl Gene ID:
ENSAPLG00000022795
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017710
2521246 - 2528515
7270