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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2523369_2523677_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2523369 - 2523677
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGACAA
U12 Branch Point Sequence:
TTTTGCTGGACA
Flanking Amino Acid:
LPRKTLLQIASYYQQFRDYA
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
47.3
-0.1
1.3
52.7
43.2
Major PPT
85
0.79
0.7
77.9
36.6
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
62.2
0.38
2
79.36
36.8

Associated Gene:

Gene:
EFCAB3
Ensembl Gene ID:
ENSAPLG00000022795
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017710
2521246 - 2528515
7270