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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2523805_2524398_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2523805 - 2524398
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
ATGGCTCTGACT
Flanking Amino Acid:
TDKNCFIQTVFPEKSDPGSF
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
84.5
0.78
0.7
76.7
32
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
50.2
0.09
1.8
69.62
41.7

Associated Gene:

Gene:
EFCAB3
Ensembl Gene ID:
ENSAPLG00000022795
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017710
2521246 - 2528515
7270