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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2525696_2525782_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2525696 - 2525782
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCCTCCTCATTG
Flanking Amino Acid:
VEKPLPKKTRSDQIPQTRAE
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
69
0.43
1.1
65.2
45.5
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
49.2
-0.2
1.9
54.99
46.7

Associated Gene:

Gene:
EFCAB3
Ensembl Gene ID:
ENSAPLG00000022795
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017710
2521246 - 2528515
7270