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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2525880_2526758_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2525880 - 2526758
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
AAGCCCATGAGT
Flanking Amino Acid:
AEKLKEAQVDEKVAAGRASK
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
77.7
0.62
0.9
69.8
40.5
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
46.3
-0.2
1.9
60.98
42.4

Associated Gene:

Gene:
EFCAB3
Ensembl Gene ID:
ENSAPLG00000022795
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017710
2521246 - 2528515
7270