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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2526852_2527522_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2526852 - 2527522
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTGCTTTCATA
Flanking Amino Acid:
RMAQQPPPEEEAKVDVSSEG
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74
0.54
0.9
68.6
37.3
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
54.4
0.13
1.8
67.25
40.1

Associated Gene:

Gene:
EFCAB3
Ensembl Gene ID:
ENSAPLG00000022795
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017710
2521246 - 2528515
7270