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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2584496_2584866_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2584496 - 2584866
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TGACTTTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCTGACTT
Flanking Amino Acid:
PLLAINFLFILSSCYWFQQE
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
66
45.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.8
0.63
0.9
73.3
36.9
Minor 5ss
40.7
-1
3.1
60.3
43.9
Minor BPS
63.6
0.51
1.7
84.15
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022503
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038886
2582492 - 2588908
6417