Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2586781_2587306_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2586781 - 2587306

Intron Length:

526

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTCC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTGCAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTCCAT

U12 Branch Point Sequence:

CCACCCTCAACC

Flanking Amino Acid:

PTYRWVREKADPQSLLVTEE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.6

33.4

Major BPS

64.7

0.37

1.3

74.7

Major PPT

66.2

0.36

0.9

62.1

33.4

Minor 5ss

-1.4

3.2

50.9

45.8

Minor BPS

56.8

0.19

1.6

61.11

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022503

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038886

2582492 - 2588908

6417