About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_2587412_2587881_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2587412 - 2587881
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TGTGACCCAGCT
Flanking Amino Acid:
PTSPSQEHKAGLVFIHMDSS
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.7
29.4
Major BPS
69.6
0.49
1
59.5
39
Major PPT
69.1
0.43
0.9
68.9
37.1
Minor 5ss
33.8
-1.8
3
42.5
44.5
Minor BPS
41.1
-0.5
2.2
63.27
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022503
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038886
2582492 - 2588908
6417